This advanced workshop is an introduction to…

Pre-workshop information

Prerequisites

Learning goals

Schedule

Outline (draft)

1. Introduction:
   1. Why are simulations important?
   2. Basics of GRNs
   3. The main steps of a scaling project
2. The research question
   1. The topic (simulation of anthocyanin biosynthesis pathway)
   2. A (brief) introduction to the Stochastic Simulation algorithm
   3. Setting on local machine
3. First steps on the HPC
   1. Loading modules (R and Julia)
   2. Installing and using R packages
   3. Installing and using Julia packages
   4. Running a test script
4. Scaling up your work
   1. Assessing time and memory usage
   2. profiling code
5. Parallel computing on NeSI
   1. Introduction to parallel computing
   2. How to execute parallel code on NeSI